NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10060631

Scaffold Ga0214921_10060631


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10060631 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3203
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F003212Metagenome / Metatranscriptome500Y
F017972Metagenome237Y
F027417Metagenome194Y
F044984Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100606311F027417GAGGMNYDYRVTFVTDYLTIITNVCLELNDTTGNLSDEAYGRAAVKGMNNIEDEIGKIDETIINDITVTLILDDEEIELNEG
Ga0214921_100606312F003212AGGAGMKDKYLVTLEIETYDGDPKNWDWSHLLVNDKTRFIESQFKGRVLPTEGEGE
Ga0214921_100606313F000821AGGAGGMNREYLEAKFDLCINEAEKDLQQEEIARAIANLRRANSALTQLFGFEEEEQ
Ga0214921_100606316F044984GGAGGMTDEVKRRLETASRKAVRDRNYRRARDRALARLAHLYPDTYKQLLEMEKKQDELQGKKWISIDGTTVLTVGVHTRATGADDLAYSSNAGENKGNNGGEA
Ga0214921_100606317F017972GGAGGVKTRHLQLVTQRHSVTTETRSIVSSPYGPVSPGSTTLLAQETLRANQEARLLELLNSLESVVENLNYKSFTAYDTLVTATEAVRVALLGTHNDEVGTDADRS
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Institute for Fundamental Biomedical Research
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