NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10068268

Scaffold Ga0214921_10068268


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10068268 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2925
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F056615Metagenome / Metatranscriptome137Y
F058150Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100682682F000258GGAGGMTDYKADIMLDLRKYLWNQLKSNDIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGMSYEDNWAICCEQILFTIYSTDISEINEIRNLMTDLFRRMDDSARDANVYSGISSKFKFFSIFVADISPTSPSEELSGFLSSDVILEVKYARHLGLTGRFL
Ga0214921_100682684F056615N/AMYDLVDSVMNMFMDVYKQFDLQDSNTGAIKKEWQFDRTVPCSAKGIISNSSSSRTGDRQIMSNKYTNDQILQIRTSDKITLREKITNIRDSEGTVIWEELNFPTNTPTVFELMGITPMTDPLGGVVGYNSTVKRSENQTIGQ
Ga0214921_100682685F058150N/AMEILVDSNAPITHKVFWQGQLTDSDALPVVKVYDITEDPAITPAINPGTVLATLTPVKSEVDTGTYNLYLPFDYSNRQKQLRLEWTYRVNGQDARKEHKIFVQTPYTDMSQAIDALGLGSDYSDPNSKSYTELCNAERYARKLIEAYTGQQFYLYDDVQIAYGSGSDILPLPYKLSELHELYQNDILLLDTINDIDNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPINDTYNGVFANGSTYRIQGKFGWEEVPDEVDLACIELMKDYFSKDKIWRNKYMKSIKTFDWQFEYNSGTYSGTGNLYADQILLPYVINKMVVV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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