NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10071831

Scaffold Ga0214921_10071831


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10071831 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2815
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Hnatkovirus → Hnatkovirus DS6A(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F026210Metagenome / Metatranscriptome198Y
F066486Metagenome / Metatranscriptome126Y
F071966Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100718314F011914N/AMITSNQIKALDENELAYLFYCCKSEWDSKNMGYEFDWYILKSFRNKAIHPMLNKYSDNLTDENKGIIMQILNKLEGNI
Ga0214921_100718316F071966GAGGMSLLGIHFDIQGYIFKPFYLLLGALYFVILLVLLGTLYIVLFLRNTLEITLNNIEKSRKKYSKYR
Ga0214921_100718317F026210GGAGMSHFINANPLDYDAKYPQVAESANDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEAIHFVEDIRTKI
Ga0214921_100718319F066486N/AKNKTLSKNDPYYLKVGKFKKKNVFDTQVDMGDRMKDFFLGLGRRVITEDEFINIGFNYALIKGLGEAEKVKSKKK

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