NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10121149

Scaffold Ga0214921_10121149


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10121149 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1878
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026209Metagenome / Metatranscriptome198Y
F080837Metagenome / Metatranscriptome114N
F088194Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_101211492F088194N/AMMNEVAATSEETTAYALGHTIATLLNLKRMVNQNMTDYSNNLEGMRGLHPMWSKSELMDQFDRAINKLNTITYPYKI
Ga0214921_101211496F026209AGAAGMCMMNKEVTNEFYDQMIGEWRTETIPAIGGIKWEKRESLGGETQSAYYDHSFYKVPFYGPYDQGRIHRALNRLYPARFNKFGGYTTVSSIQQLDAEHIKVELCYHIGD
Ga0214921_101211498F080837N/ASHNMCMINKEQGNKLKHEFFPKMMTTQVLKPYLKEAKRVGYTVSGSVKDGFIAVVTDACEKHPAGEVVMRGVKKPGVNVWIMGFNKLYWQEPTIAECLAQSKWYAEMEGASK
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