NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10202325

Scaffold Ga0214921_10202325


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10202325 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1238
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F031792Metagenome181Y
F083706Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_102023251F083706N/ARRRGQIVEHLTPRGWLVVGILIGLAIWGLWEVASHLLWTGNGWEWCEDLLNCEKEGK
Ga0214921_102023253F031792AGGAGGMGYEPELNDPVFYAGDYEEAVKCFICGDQLDRDDIVWANVEGQIVKEGNDTAWCVVCLPSEGESND
Ga0214921_102023257F001477AGGAGGMSNVYTIHPKKSDLILFYEVVEPDGGNTWGGANAEQAIQWLAHAPAGSRILVSAWDSDEEDAHLVGQTIDITEIVRAASL
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