NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255772_10405152

Scaffold Ga0255772_10405152


Overview

Basic Information
Taxon OID3300023176 Open in IMG/M
Scaffold IDGa0255772_10405152 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024089Metagenome / Metatranscriptome207Y
F086827Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0255772_104051521F086827AGGAGMQVCTELEQKYKDQILEKFLDHAKKVEADHDVKTDADNTDYWNSMKLDDGSFVDFNFHMMSEWDDVDRSWTCEVYSVDPPTEDNEYHSINMELTLFLAFYHPKTQKLEIEI
Ga0255772_104051522F024089N/AMNKLEEAIGNLNNIQENIDALIYAIGDSPQQYTEDELLNMLMGMSQLHQTWYDKLWVEYENFKREHRAFDEDDIFDQNYLNNEKKGV

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