NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000027

Scaffold Ga0214923_10000027


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)184783
Total Scaffold Genes291 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)214 (73.54%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F007110Metagenome / Metatranscriptome357Y
F007305Metagenome / Metatranscriptome353Y
F008812Metagenome / Metatranscriptome327Y
F012658Metagenome / Metatranscriptome278Y
F037567Metagenome / Metatranscriptome167N
F041150Metagenome / Metatranscriptome160Y
F053106Metagenome / Metatranscriptome141Y
F054798Metagenome / Metatranscriptome139N
F062580Metagenome / Metatranscriptome130Y
F078367Metagenome / Metatranscriptome116Y
F086677Metagenome / Metatranscriptome110Y
F088817Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_10000027119F007110AGGAGGMNCTYCNDSIDFDRYEFLVETGRQIVCKNCSVENHAVGFMDWGHKTAPSLVMVPANATETIRKLNRANRRSR
Ga0214923_10000027120F007305N/AVLEFWLKKMKILNKTIRKAYANWNPNPLIRCYHYAAAFDGNKMICFTQNNPIKTHARAYRIGEDFNLPKYKEYPFYHAESHLVSKLLDMYNTIDPNWSICILRINRKGIILGSKPCENCNKLLGAVGLKNIYYSMDDGNFCDNNGYVVSYDSSLELTRSITVI
Ga0214923_10000027162F041150GGAGMGMGSFAVGSFVIEYKDLKKICPDEIKAIEKSKYFKDVGWGIFGRWLGWDDPDMVNDALYDAVSNDKSNPVIRLGLSEDQIVEDIFQEYEELVVALKNSFNKNTGLTLYFDSYDEEGGDRYDNPGDKDGCIFCVDGMVQLTPAGEKFKDIITERKWTQYG
Ga0214923_10000027173F054798GAGGMIYLYINETQRLAEIVSELVKLNMGVVAELHGNKWHIEVTI
Ga0214923_10000027209F062580GGAMKVITINMELVIDDDIKDSHIPEYLNDKLYTDPEFFGDFGSENILSIKEFE
Ga0214923_10000027221F008812AGGAMIQWIGVVVAVLGLAYTGLKDYQKGDIKIPIIQKHLTPVKHPIQYCLMAYDPNVDKVFYLHENGQWHDYAPEQRRYSTTPQSYQNQGQETVGSAYGTQGIPRYNYGQQAQAAPYTKRY
Ga0214923_10000027222F053106GGAGMPKFYVKSNTLEVVISRKDALEASITGLLMTNKFDIIDEYFYADERGYRDYISADSKTNVISTKSIVRAAGWELSRDDNE
Ga0214923_10000027224F000325GGAGMKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLNNGCYAEATENQYKNARVAGFANVVTEKNKIRAMILDAKKRKKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKKFAWCDSDMKIAPKRPKSKIKAEAWRKSLPKLVVLNGTKFVTCPEIRRGRSVITCTGTKDSISCDLCVRGLANVLFPAH
Ga0214923_10000027228F006543AGGMKKFSFVVDIVADDLDREVVVDSISTCLTDALPSDVHANVKAGEVKAFSEQGYKVWRARVTGVTAKQAGDAHNGKVESEAEAVA
Ga0214923_10000027232F037567GGAGGMEWLSFFGYRRPINGQKVYYFGPDIGVWRGRYEIHRDDPVSPHILICEESPGLVDRMDAPWWMPYEGQPKPERPATDYPEDYPT
Ga0214923_10000027243F088817AGGAGMNGYELIAEFERVVRDIVVVPNSWLPEDFRDHRTDGVTLADLERKCDSRDVTETDHQIEKREKDKRIEIYAAMIANGQEIEYILK
Ga0214923_10000027248F012658AGGMNSLDKIMSAMRSGKYGTVTDPKGNVHVGIINGILREDGSGKNWIVTVTNQTASKNVFIHAK
Ga0214923_1000002737F078367GGAGMFNILVWCVYGLFVGSIAKSIVPGEEKMGFFQTVAIGVAGSYMGGAVLYMVGTYDSLSPSGVIMGIAGGVLSLILYNKLTKSS
Ga0214923_1000002795F086677N/AMINTDYLIDYSDWFDEGGYCQVYPIKDKKGLLFKEFRNKKKAQQAYTIQKKLSKFDLAPKIYSKVCKLSFAEEDGVIFYEDSDWGYVTEYAKTYKANTKISMRDIQKLVDEIIEKTGLKFWDCHWYNIGLIKRKGKSKLVCIDTGKESFDGESNAWGNPDPGPKCGYCLKYNCSCED
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