NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000136

Scaffold Ga0214923_10000136


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109659
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (21.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016038Metagenome / Metatranscriptome250Y
F052416Metagenome / Metatranscriptome142Y
F052418Metagenome142Y
F065460Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000013611F052418N/AMKVSLATLKNLLLNNVAEIKFTRRRSRPGLPPTRRMLCTNSLPLLNSPEGRIALNYRRAINAVKYNPTAKDLLITWDILMQDYRCVNMAACNMLNLIPVSQFWNFFNKKLSLMSSTEKTRFMNS
Ga0214923_1000013612F016038N/AMADIDLLPTQKSLIDLSELPKNSFNSVFFGFNLKTILDDVLLVKFVDETVDGSSIMRNGIVVPINADTRAWRIGEIILCGPNAKYVKKGDFVCFPNNLGVPVANIDIDGYGTLKKGIFLNEQRIFGICSVRNDNESVASHIKKSSSKQRGGN
Ga0214923_1000013620F065460N/AMTFNDNVDKLLESFKYLKTVKKEFYPKNFRLSEDFVKSFKTEYKRLLDEGLHPRIALARINKALMFHTR
Ga0214923_1000013670F052416N/AMDFIVPKKIVSPISGETVVPRLHTYVREGKQIVEAEYIDPASGVFIRKGIVSVTDLPKQNKNTDKKAE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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