NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000252

Scaffold Ga0214923_10000252


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000252 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82052
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (25.81%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F038565Metagenome / Metatranscriptome165Y
F039478Metagenome / Metatranscriptome163Y
F050171Metagenome / Metatranscriptome145Y
F071967Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000025237F038565N/AVTNKKKFKIPDSLLKQIDECSFGGYILFNFSSKGEPQVFTKFDNQINAMALLYYVNTWSQSIDQLNLEATTDQIARKNQEDDFDDNQEDKN
Ga0214923_1000025272F017268N/AVNLDITLLFNIVLGSLSFLGGWLFTRVFSLFDKQEKLVKDINDKTFSDFITLRKEMELEGRKHQQEIADLALKISTTYVTKESFDDYFDRIEQKLDRNFDIIQQHLINKK
Ga0214923_1000025274F071967N/AVSNLSEALAICSEFADEYGIDSKDNNKIIVYMKSEYINELKKMLENKNYKLKSFQVYGDEAIVYFIPKKRK
Ga0214923_1000025280F039478N/AMNWIKILNFIDGVFEEQKDPPVLGTLYKIKGEDLPFRYIRFTNDFLSNKPVYHFKHHQLKEYKFNDLSKVERKANLEEIRIYNLIKDHINEVAENND
Ga0214923_1000025288F050171N/AMGMFNYIKIEQDLPLNDELKALNIDFKKEEFQTKDLEPNTMDTYIIRDYKLFELKVEGHWEDNPDYVKDGTRFGEFFNKNKWVKDSEEEVFRDDFTGTIIFGCYIRGKHIFDNDLFPDWKCVVVKGLVVEMSLITPIHRHSSKDRIESDLKFQLDLEKHERKMRCPVYSFYFKYYIKTMNLIEWKLDAGINQIIKFLNWLRWKGMRKVIRFLSPR
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