Scaffold Ga0214923

Basic Information
Taxon OID	3300023179 Open in IMG/M
Scaffold ID	Ga0214923_10000258 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023179 Open in IMG/M

Scaffold ID

Ga0214923_10000258 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	81337
Total Scaffold Genes	167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	110 (65.87%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

81337

Total Scaffold Genes

167 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

110 (65.87%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012108	Metagenome / Metatranscriptome	283	Y
F035281	Metagenome / Metatranscriptome	172	Y
F036210	Metagenome / Metatranscriptome	170	Y
F040587	Metagenome	161	Y
F041150	Metagenome / Metatranscriptome	160	Y
F042870	Metagenome / Metatranscriptome	157	Y
F056376	Metagenome / Metatranscriptome	137	Y
F060726	Metagenome / Metatranscriptome	132	Y
F085623	Metagenome / Metatranscriptome	111	Y
F088817	Metagenome / Metatranscriptome	109	Y
F089832	Metagenome	108	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_10000258104	F040587	AGG	MIQWIGVLIAIFGLAYNGVKDYQKGDIKLPKLPQKQVLTKPVYPIQYCVMAYDPNLDKVFYRHEDGIWREFAPTQKRIGEYYR
Ga0214923_10000258107	F089832	AGGA	MKYYIKCGTLELIYSTSKKPLEAAVDALWETNKFDVLDEHFYVDERGFKDYVSALPDTKVYKSTKVIEKAGWSLEK
Ga0214923_10000258108	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDALPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALSQGFKKFAWCDSDMKIAPKRPKNKAKADAWRKALPKLVVLNDTKFVVCPEIRRGRSVITCTGTKDSISCDLCVRGLANVLFPAH
Ga0214923_10000258111	F012108	AGGA	MIKLELTVREAMNLATSWAYNNDVELYHKIVNAFEMELGVNQNRTVTITGGMTLDNRIACIKAIRLHTGWGLKESKDWTDCLVGGWHYDKFVPAKSGAKQSITLKTPEAAEALLRDLVGLGCEGYLS
Ga0214923_10000258118	F104766	AGG	MEWISFFERQPEDGQGIWYYGQHIGVWVGRYSYCANDPFSPHRIFCDEAPGVVDRMDAPWWMPDDGKMVRPHKPERIIPKDYPSG
Ga0214923_10000258123	F088817	AGGAG	MNGYELMAEFEKLIKDMIMVPNHWLPEDFRDNRTDSVLLADLERKCDAREIGETDHQIEKREKDKRIALYAAQISSGQEITYLMK
Ga0214923_1000025820	F041150	GGAG	MGMGSFAVGSFVIEYKDLKKICPDEIKAIEKAKYFKDIGWGNIGKWLSWDDSDYVIDAIYEIVVDEQIAENVFETYDKLVTSLKNAFNQKTGLSLYFDHYDEEGGDRYDNPGDKDGCIFCVDGMVQLTPAGEKFKDIISERKWTQYG
Ga0214923_1000025835	F042870	GGAG	MTTDSDSVLPDSKIPWWDNDYEGVYSDDPENGYPYDMGTKVQE
Ga0214923_1000025856	F056376	GGAG	MMILIKCFSTVIGHKEAQELVTDLNQMKSAQSEDFYIEYDRSKDYYKDDTYIVVGNVTENDWDELNLDMDFMEVGDI
Ga0214923_1000025876	F085623	GGA	MTKIRTLNLDYDLIEIHYNPNLKNKPYLIRIFNYNNDYPEELRLDEKDMENLYKILKEHKLI
Ga0214923_1000025879	F060726	GAGG	MYKNVLLTDKEIALIKRIIGDTLHEKIVPEAKNLTIILNRLRQIQPSIQHNQFFNYGK
Ga0214923_1000025884	F035281	N/A	MDATELYQEKIMIKFVMAVCFILSGSFVVAGECASNSCTLRSRVVNVTQEVVSVPVTVTRRTVEATRNVGRKTVSRVRNIVR
Ga0214923_1000025886	F036210	GAGG	MKTKVINQINRQEIQRKYIDQILGELDFMQIKDRLRDYLSKEKDKESNYALESEIRKEAPDILVDNWEDFDKPATLTKEYQHHA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214923_10000258

Overview

Ecosystem & Geography

Associated Families

Sequences