NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000523

Scaffold Ga0214923_10000523


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000523 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58069
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (27.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007255Metagenome / Metatranscriptome354Y
F009453Metagenome / Metatranscriptome317Y
F014361Metagenome / Metatranscriptome263Y
F015306Metagenome255Y
F037077Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000052313F015306N/AMMSKSVHSTVPQFEKQKVPRFRRLDNDHISAIESLFKRFPFLNERVEIHMPFARAKPTFSSGTVWVWPKFDKRPVGFLIFMEGFAPCIWYSERQEGMTFRWLLPPNFCQKGATVCLANILTGESSLQIEDIIISEGKDLWSNMTFEERWAKLRNFWQSLPPDQPLLAFKPRVVNPIPLNQWSLHYDAAIYWIIQPNHSKQPRWYWKDVVTVPEHKPVEFIAPVIKRGTEILNILVAAIEPYSKAVLPDTYTLLSQENVNLGVASISTLDLSLDIRKAITNKPFLPVEVKWNEGFNKYQVLRIMPEDTPITTASFFFHKNM
Ga0214923_1000052325F009453N/AMAQAGTLLSDLDSKPPVFSNKDDDLVNKILTDMNIPSQSNPIMNSPPPSGNGSRVMNSPNPNSTYPVAMDPGTATAHMIGKDYPTPADFAHLMHSPQFSHGGSQFANVPQQGQRAPQQPTLVESFKGNMYSDIMSQIKQPLLVAIIIFIVSLPIVNVLIGHYLPSLLRIGGDLTTAGLGAKALIGGFLFWFIQKVLVPLMVV
Ga0214923_1000052340F014361N/AMSALNAFTTQLVNFFEELCTTFPEERDIKLATEAITGAKKINPRLILDLFTEHVYIELASSITNRDIGHIRQIAQKKISTQFNEMISALAIFDKHWDTMGTANQEVIWKYLKVLCVLSEKARAN
Ga0214923_1000052359F007255N/AMEHVCFSRNNQIMMPNWFPWIFVGGLIFIALSFTATKYKDKDYKKIQVLQDFISGAILIGFTGVLVPDMFPKMGLPESLPSFGTGLGSDDLDLQVGPPRLAGR
Ga0214923_1000052360F037077GGAGMPTTIYDSSLITQRRRAKAESGSFISRISPWNSNNTTNQPNTGYAPMLGIWDQSIINTVKNGNMKFYRKGDGGCTTVSNGCPCEPLAAGECCGTN
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