NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10000549

Scaffold Ga0214923_10000549


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10000549 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56446
Total Scaffold Genes98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (65.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007110Metagenome / Metatranscriptome357Y
F007305Metagenome / Metatranscriptome353Y
F009680Metagenome / Metatranscriptome314Y
F070037Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000054927F070037GAGGMNFTESFQEFSSKLSTLNLALYAGAGLVLWVLFKDKLSPVQEVLSSLINKIKGEKSVVPNDTLTDTFVPTTPAIPATPLDSDDIFFKLVASWKQTRDLAELSECSEAVKVADQMFPFLSPNVCSKKQDKVV
Ga0214923_1000054931F009680GAGMSETIIHFWENIATTSIGIIITMIGFWITIGKNMVTKAEVLAMIETQSPYVNDRQFIMERLNSNKENQAAFALALQRNTDVMTELKIQIATLGNTLKALEDRIER
Ga0214923_1000054991F007110GGAGMICNYCKSIVSEERAEFLIEYNRPMVCIDCSTEQRAVGFMNYSHKTAPDLVLCPANAKEKLRILNRANRRAR
Ga0214923_1000054993F007305N/AMRIIYKTIRKSYQNWNPNRLVRCYHYSAAFDGNRMICFAQNNPIKTHAAAYRIGEDFNLPKYKEFPFFHSESRLIDKLLGKYNTIDSSWKVVVMRINRCGLILGSKPCENCNKLLNAVGLNQIYYSTDEGFFEDYNSNTIHIDHTSALSV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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