NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10001970

Scaffold Ga0214923_10001970


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10001970 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28211
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (42.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014710Metagenome / Metatranscriptome260Y
F026209Metagenome / Metatranscriptome198Y
F036073Metagenome / Metatranscriptome170Y
F044902Metagenome / Metatranscriptome153Y
F068390Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000197038F026209N/AMMNKEVTYEIYDQMIGDWRKVSEPAIGGIKWGKREQIGDEVQSAYYDNSFYKVPFYGPYDQGRIHRALNNLYPARFNKFGGYTTVSSVQQLDDQHIKVEMCYHIGD
Ga0214923_1000197040F036073AGGAGMSETYNAELHCKKIAWMVKNSPDWDAEKQTLEQYLEVLPDYPTDAQVQDFDHLYVAPFAPVKKEKPYEGEDVNE
Ga0214923_1000197043F014710AGGMMNTEVTEYKTIPTQFKKKGFTYTQLKREGKRAIFQQTKEGSSLNNYEVVKIGRHNGYSMGGVFIEPAETYPGSSLWGITGWTCTSIDDAMKRYEGLSS
Ga0214923_100019706F068390N/AMMNEALDKVDWNALYSVGKDSKEFTFDMFDPLLLADNPASQNWTATVSFRGQYGDRANAKKNILFRSGVPSPHELETSHSWYMEEPKPSVKGADKENDKLWRKFNRVELKLDEMFLNAFFNVASFEIQSFLIEAGWYERKFSMYAGCSMCKCSPGYNMKSAGSIKNTAIDVVFKKK
Ga0214923_100019708F044902AGAAGMRVQVDGDTTSIRKVYHMQFWYKPYMDMENDKKFQKQLSREESKTKKQFEGVDVEYAITTYEGKISKPFTHGDYFGCWQVVNWKRYRRDDRIIEIGDYNRICFNDEDFGNIWHKAVLATKEDIYDQATSPGEQVLA
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