NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10003043

Scaffold Ga0214923_10003043


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10003043 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21450
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (75.47%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000671Metagenome / Metatranscriptome945Y
F008814Metagenome / Metatranscriptome327Y
F011394Metagenome / Metatranscriptome291Y
F012975Metagenome / Metatranscriptome275Y
F014140Metagenome / Metatranscriptome265Y
F021988Metagenome / Metatranscriptome216Y
F068743Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100030431F000369N/AMVEIELADHFDRMNKVVSELLKGNSATQIASLTGFQRKEVLELIDEWKKVIRNDSSAKDRAKEAITGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQQVGLLDNAELATQISETEHKQEILVKILKEVTATCPKCKMEVAKRLSQITGIVEAVIIEENND
Ga0214923_1000304319F014140N/AMNTYKIKLDVEIEVQAFNENDASDYVNDIFSVDDEIKNIKINSIKEK
Ga0214923_1000304322F012975GGAGMLNLTLKGVEVFMDRAKSKTQDTFWNNYDLIVWKKTPSGFTNINGMFRKNSWGTAEKFSVDENGIWKLPLKYVKHFK
Ga0214923_1000304324F011394N/AMPNQFEHGINLWTGEPNKPVFYNKQMAKKIRELKCPVNDLKMDIIKYPEFLAIRLYESNFSQYDGSSRVKAIEYIEMVKNIIESFGVRCELEGAK
Ga0214923_1000304326F000671GAGGMEKILCYSCNKTKNKLHAKKSSLLAINLLMCETCIESKFEPRWTVILAGRQYGADLVRDFILKKRYIGDDISASELLV
Ga0214923_1000304332F008814GGAGVPNLTVLEEIIKEVAIELYQKWYNSIPPEERTEESSKAMSNNANETTLFVIQNFMNKFNAAAEELKQND
Ga0214923_100030434F000376GAGMSSYQEKAKECKCCGKHVPLPTVLKEYNGVVVCPTTFSNIMEYKRLWTLIGSRPVGSVRKHFSEYVQQIVEQSIDKNEDGTL
Ga0214923_1000304343F021988AGGAMKDELKKDDGTGMVPPPNSAPAGAVTSREATRKNPRQGLVIDRNRHGIRRERSVGNVQPKKTGRKKV
Ga0214923_100030438F068743AGGAGGMPWQIKQGASGCKGFAVVKEGSGELVGCHPSKSRALAHLKALYASEAQNNKK
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