NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10004165

Scaffold Ga0214923_10004165


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10004165 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17668
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (16.22%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F005387Metagenome / Metatranscriptome402Y
F006018Metagenome / Metatranscriptome383Y
F007859Metagenome / Metatranscriptome343Y
F010397Metagenome / Metatranscriptome304Y
F031030Metagenome / Metatranscriptome183N
F045085Metagenome / Metatranscriptome153Y
F072270Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000416512F007859N/AMKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSKVHAINNKYITYSMVEISTNNVYTAHTNYYRAYYNCDGKIIKTTPNN
Ga0214923_1000416517F031030AGGAMFDDIVCKYPLPLPEDPKGYCNNRYQTKDFDNVMDLYEIREDGTLWLRCAEYEYTDGNPNAKSLIEKLPIRKEIKVWWQQILPITDTVRLYAYDSDTNDTYDYWIEYDVTFVDGKVTGAKLLEFTATDNSERKEQHRKDVEYWTNRQKFEYTLFYRLIGKHYNKAITFICKKVHKLASWITFKIWNVERFLKI
Ga0214923_1000416518F001840N/AMKDQDSIFLICDCYEHGLLVEKFKDENEVSLSLFERGLKGRTLCWSERLRWCWQIIRYGKPWSDFIILSEENQKQLKDFLNK
Ga0214923_1000416519F010397AGGAMNPNEFERTKPTITMKKINDLINRIEEERVKTEILYKDRIRSLEEINSLLLDMKDSFKKG
Ga0214923_100041652F006018N/AMKKYSIKTNDIGMCMSVGCDFYQTCTNNSVNMFYKSKRKFEPVLDGSVCLSYSSGKNTKEYSDNNYPNLLKKIYIYE
Ga0214923_1000416521F045085N/AMKILLKLIDLTFGLIFGSLFAMGVLLVLSIFFVILIPFMFYFIVKEVLRKLITNK
Ga0214923_1000416532F005387N/AMEKLNRKGFFSTLFGGVVGVIAGTSVKASESVTTPVVEKVLTCDKLVFTHSSGASCVMSFVDSDNFAIRVNNSENISININSPLKKEVSYHKVESDSKNIVYTHMTIDSRGNLGLGTAFPTAKLDIRG
Ga0214923_100041654F072270N/AMKLEKIPLNKFLSHLTNISALEYLIELLPKCTENGPWIAGGCLHRTYRKLPLTNADVDVFFKNKEQFEKFVTAISLTSLFSGNTIESTIYSEWHCTLTIKYMDVDWKIQCVTFKYFDNIEELFKSFDINVCRIAYDGTNVIYEDGILDDIKTNKLKFNEGSIYYPSVTLKRLVKYVKMGYDIEDVDLKMLTHAFYKSKKKAIDILDQDLLTKKPIQTYEGLK
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