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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023179 Open in IMG/M |
| Scaffold ID | Ga0214923_10004613 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16519 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (15.00%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004306 | Metagenome / Metatranscriptome | 444 | Y |
| F009960 | Metagenome | 310 | Y |
| F011935 | Metagenome / Metatranscriptome | 285 | Y |
| F025742 | Metagenome / Metatranscriptome | 200 | N |
| F038092 | Metagenome | 166 | Y |
| F039484 | Metagenome | 163 | N |
| F050949 | Metagenome | 144 | N |
| F055733 | Metagenome / Metatranscriptome | 138 | Y |
| F063369 | Metagenome / Metatranscriptome | 129 | Y |
| F103248 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214923_100046131 | F009960 | GAG | MLTIENINKINGYSLEVKGKGYYFKGWDNTTSDVANFTLAGVSASNPLIKITLHKKGRMVFDDIQKSKGCYVYGVAVDGLLFHYTKERLNTPAKFRNEIEQILNAIAC |
| Ga0214923_1000461310 | F025742 | N/A | MLTIKNEDKLTGTALTGAGPDGPIAWHVSGMGGSLHHYIIYLTRDDNGWERKVTLDRYHSVNQTGKQYKLECGTNHMHLYKTSMDKIEIFTNYLEYFI |
| Ga0214923_1000461311 | F039484 | GAGG | MILKNPDKLLKQWIPATTGDIWFVDDVSVTMDSHGTAYIFRCITELPVKTSPNQQYYNSTRRIHKEVKLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMNKFISVLADLLPNTNNL |
| Ga0214923_1000461314 | F055733 | N/A | MAPIIYMVQTMVWIAHNDRKRADTISKQVTRFGEVNGLKYIVIENKED |
| Ga0214923_1000461320 | F004306 | N/A | MSLAQRELGSTFRKDNETNMSNKHIEIIRFDNAKIHIKEYLNGEQLPNTSTYQPAILKMTGARLLIINPDNKEEYYDCRYDDCIIKRLNG |
| Ga0214923_1000461327 | F063369 | N/A | MIVTITFSIIAFMLGVQLVIKFTTNELDRPYRIIRRQYYDVGKLKNEYYVVEKQKQFLFIKYWSGVACEDSWDTTNVPSFQNFDEAYTLLQKCKQQKPLNGFKDEVEVEWTKYPMKIN |
| Ga0214923_1000461331 | F011935 | N/A | MIKEIQNFDKVYGEQIYPADGMVYTIEKANVIKTNSEPELLEYIAVKLLDMYNNHRPAEYSVAIFADNKNQHNIACVYKKGEQSSIFTDKFMSSVHFKNKEFFKTYVVTLINQALNH |
| Ga0214923_100046134 | F050949 | AGG | MLTIKNIGRLISDSFYDKMGMYWVVDKIIDDTNEYLILIENRKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKLKTYIPIETISDKRLLIKRMTEMIDNSYDI |
| Ga0214923_100046137 | F103248 | N/A | MLTIQNIDKIINITSPLPYKWHISAVDELPDDLYGFSVYINGKIENIFYLNRESRYMSGRNEPVYRLYKNFDHSKINRWLSLHQISPYFIKQAIDKMLNE |
| Ga0214923_100046139 | F038092 | N/A | MPHIPIPPKPTMTTQQMIQQLQRINTMPQQQINTITKAVLDAQDIRDIAEAQAKATMIELMKQETELKKQTFLTIENIDKIRGHKYSEWLEVGGVKEWDNHYEFTLLDEKGTQVETIILHRKQTSDKRYIMEYNNQTLWVTKDRLSTIDGVIECMQEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |