NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10008404

Scaffold Ga0214923_10008404


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10008404 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11000
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (41.03%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F016774Metagenome / Metatranscriptome244Y
F026210Metagenome / Metatranscriptome198Y
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F048123Metagenome / Metatranscriptome148Y
F049419Metagenome / Metatranscriptome146Y
F062446Metagenome / Metatranscriptome130Y
F064403Metagenome / Metatranscriptome128N
F096610Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000840412F062446N/AMIFNPIKIIAFVVILLAWILMTFFFVGCANSSYHTIPNAMCEDSQNYSTKYNMMDSQDGSKNPNAQVNIFGVTY
Ga0214923_1000840418F016774GAGGMPPKKQKIEFLTEHIASLNHWRDQLLALEKSYYSKDPEKERTCRNMLNKYLDDVLTHNKNIKEKPKKKV
Ga0214923_1000840421F096610N/AMANRPKTYFVKMTDNANGTFTISEAKVLDKVNQHARHWRSFDKRKLTSKLRVADLFTK
Ga0214923_1000840423F049419N/AMKLPKLNLLDLATTYIFFGLVYGAIVTLCWNYLFELTFNIHLSFLQGFGIYLISRILFGNTNTNYISNFYNQKTPDLDKIDDYLKEMQEELDKEADEVEKQYQDLDKKD
Ga0214923_1000840427F044916N/AMGRKKVEKSRIEKGIKKEEKTFALMAKKIVDAIKDEKLLREFTRGCLEELYKDNPKLFADHSKLKLIKK
Ga0214923_1000840428F064403GGAGMINPRSKILSDLKKAYLKEHPVTLVDRILGYLNNLTDYQLCQLYSEKYETNPKYMAEQFEFKF
Ga0214923_1000840429F036564GAGGMKLGRVCLDLNYIVDMDNQEMVERAVECLYEDLMQGVKYGNITNWIDVLEDKNAKEDMIPEFLLEKEND
Ga0214923_100084043F011914N/AMITNNQIKAMSEDELAYLYYCLNTEWDSKNMGYPFDWYILKCFRNDSIHILLNKYSANLTDENKSLIMQILNKLEANI
Ga0214923_1000840431F032548N/AMKKKQNKDMEKAIKLLAELVDQADEDCPHDCRTIHFMNALEEASEFIKEYRNKK
Ga0214923_1000840432F027756N/AMKLKDLIDRKILYLNFPINRYAIQEGKVTEISPAEKCIKINNDWHLINNIRIIELFSEDERPKLGFGLTKNEKEAK
Ga0214923_1000840436F030670N/AMKVIRYIKELEDEFGKPLDRWAVYEEIHKPNYPHAKFIDAKIVKTFSTPYHARNWMENDGKRIN
Ga0214923_1000840437F034827N/AMKYTITSRDKEAMVEFDSIKEGEVFSFFDPESVQRGNHSIYMKIKNGSNNILNLDDGKVYGFTDKKRNTLNDPDEQQGDKVYKLNAKINIIV
Ga0214923_1000840438F048123GGAGMKPRYDFNKGKLISYDGEIIEFAETKTIDKYADQVEEIMSLFNLKKGEYILTDESTIGHFGKETINKILLQKFKKKYGFSLTNNSNISKIAERMYNFRPF
Ga0214923_100084047F026210AGGAGMTHLINANPLDYDAKYPATADLGTNDDAKMFVMERNEGKEVMFQIEDGTQFYGKISSVPNSEHYCVIVDRNGTPWEWYVREEAVHFIKDIATKIR
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