NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10010881

Scaffold Ga0214923_10010881


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10010881 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9179
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F081071Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100108815F081071GAGMEYIELSGVPESKWPTFKEWFAWHEKLDLVGVAKDGDKIAGVAIARCVNNGQDTKHYEHSEDGDNVFVDLTITNTDGISNALSRKALKCLLSILWDRFGPRRRITFKRSGVYKEYDYLKFMRKAMA
Ga0214923_100108817F000635AGGMTLSEIAQFAGEKVGKTDSDTLVFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTNRTITLGSNVETPLSVSYDKSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAELDLYPRLATAGTETLRVVEKLKCLTRTNIVVDFPPATTALDDELRLPHVHQVVLALTHADALERERQYAKAQAVVQTANSDLAAMANYELSQVGGVKQITPVSLGDLMTEEITAA
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