NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10015307

Scaffold Ga0214923_10015307


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10015307 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7287
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (47.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014710Metagenome / Metatranscriptome260Y
F026209Metagenome / Metatranscriptome198Y
F036073Metagenome / Metatranscriptome170Y
F080837Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1001530710F036073AGGAGMSETYNAELHCKKIAWMVKNSPDWDDTKQTLEEYLDTLPDYPTDEQVAEFNHLYVAPFVRPTKEVPFQGEDLSE
Ga0214923_1001530714F026209N/AMMNKEVTNEFYDMMIGEWRTETKPAIGGIKWSKRESLGGETQSAYYDHSFFKVPFYGPYDQGRIWNALNRLYPSRFNKFGGYTTVSSVEQLDDQHIKVELCYHIGD
Ga0214923_1001530721F080837N/AMMNKTTNNKKHEFFPKMMTTQVLKPYLKEAKRVGYTIEGSIRDGFISVITDECEKHPAGEVVMRGVKKPYANVWIMGFNKQYWEEPTLEEMLAEANK
Ga0214923_100153077F014710GGAGMTQTINGIEYKVIPTEFKKKGFNYKQIKREGMKAIYHQTRDDSSLDNYEVVKLGRHNGYVMGGVAIEPAETYPGSSLWGIMGWTCTDLESANKRYNTI
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