NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10018366

Scaffold Ga0214923_10018366


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10018366 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6424
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012014Metagenome / Metatranscriptome284Y
F021096Metagenome / Metatranscriptome220N
F060705Metagenome / Metatranscriptome132N
F064517Metagenome / Metatranscriptome128N
F098891Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1001836610F012014N/AMNLLSKEVLIGAASLGAGAVIAKVVQKKVLPMISPTISPVVGNLSTLVVGILTPTLIKGSVGTGLGAGMIAVSVAGLVDPYLAKAGITGYDDTYMGDVLMGETGGDVLMGAADFGSPSNDFTSAASGEMDY
Ga0214923_100183663F064517N/AMARTTTENIFYGRSQQIIADGCFAIAFFRPSTSNPVNVDGIPLEAGQTLSIKQNVGDEDWSTYEIVFGTGAATNELYVTKIMPLTR
Ga0214923_100183665F098891N/AMSLAQTAILASALKGGSSSTPAAKPSGIVESISQKPLQWLVVAGAVVYFGSKALGKLVKTGEERRTETAETTTSKDNAFSFKTFLAQTIPKNTKLLSAAGAYKFAKEVYEALNFYFDENEDVAIGVFKVLPSKIQVAQVAQSFYNYYKIDILNYIKNGNEKNKFRGGLSEDDYKQVITIVNKKSKF
Ga0214923_100183666F060705N/AMAISSLNFIISQFESEKYRYFAIYDEDGDRVYTQNDLIDVEAAINKLRSFFKDNQGYYTIRVFSKKLSDKNNLIARDNSTIAKYNVEVTTPVLPQGVNGLSGMGGNNMLPPDDPRSNAPNMFQVLGQLSQVEQNMKLMEKDHAHYREMKEKDDLIAKLQENEGKSKGMGAIIDRLGEHLADPNVLVGLISGVSQIFKKDVVAPMHGIRSEDIMPMNGIDEQVINNISTRREKMIGAVNFLMQHDANFPENISKLAELAKNKPAIYSMAVSYLNNL
Ga0214923_100183667F021096GGAGGVAAVVSPIINYFLTHNLCKDYTAIEGEMSTLVTLNFPNTGNYQRSYYFASQTMLDGQNATITAIEIVPSTELTILPTGQTNVDSSILPNGVLYVSNLKRSIIATLPLYGLQRSPNNGKPTFTYFNDQVWQNCYVEFTSSGFTTPITPLTFRVYYVPKIKN
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