NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10021087

Scaffold Ga0214923_10021087


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10021087 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5810
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011208Metagenome293N
F065530Metagenome / Metatranscriptome127Y
F069832Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1002108712F065530N/AVIGAILQIIASILRLIPGWKEKRIDQIEGEWRNNNQAIDNDLGPKPWWMRYNDTINEDKRGGQ
Ga0214923_100210875F011208AGGAGMTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWQKWRLENGRPAIKRER
Ga0214923_100210879F069832N/AMDDIGGSPTAHKAKNGKFKFSPEIEAKILDACGSGFTIEKAGALVGVNPSTIRTWIQRMPKFGEKVETARKNHELSLLKSIEQAGEKSWQAKAWLAERIYHHAIPSSRLTVDTSVTHNAGAGFAQLLAGLASRRAEKKAQVIDAQVIKPIEDTKSKYNTYCATDDIQTIVTPTPGQNEKAVGKARHVRMKRRKPRKSMGDTTTPPAQPPAPFETHNTPLNNSDSK
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