NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10022924

Scaffold Ga0214923_10022924


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10022924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5487
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022886Metagenome / Metatranscriptome212N
F025032Metagenome203N
F030763Metagenome / Metatranscriptome184N
F036239Metagenome / Metatranscriptome170Y
F053288Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1002292410F036239N/AMKIKGWEKISGFTYKGFSIVNPIHDANEEVYYATVLNLNQVYKPKWDMVLSISVDDVITFRIKDNESKHPLGKVHLTKVNIETLQQFREQYEMLVDDILEEAQSYTKTKTGTTGPSQGIINQVQSTGTNVLYGSSSLSTNTSAHLIQTLQTLQQQIDDYNKKL
Ga0214923_100229245F025032N/AMISLVKILEGESNVDKFTYKQRDAGGVRPSYQNTKLVKQGSAGDYVKYNVMVMGKFGGTIYYNKADKTMIANGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGSTGMYN
Ga0214923_100229247F030763N/AMLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNAKTKKSITMAIIREPLAEGTETFETAYHFSLVNDDVRPANIIEDVIYHSVLEDMELFGESLTHYLNTI
Ga0214923_100229248F022886N/AMITIKNWDKLTSMFRSQIDISELELCYEITYYYPTLPSNEYYRITLSRMNPPQQDHPHKDEYLMLCGESEYWLNKNQLKDVDTVYEAMVDIVVRHNLNNNGVKC
Ga0214923_100229249F053288N/AMITIKNYNSDVGYGTFFGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNKLKSKKRAKHLPISGDLYEVYIQDMVSDKWRRTVNLEKRSLNKSAFYNWVESVIDDEYPLPF
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