NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10027299

Scaffold Ga0214923_10027299


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10027299 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4862
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014839Metagenome259Y
F031033Metagenome183Y
F082389Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1002729912F031033N/AMKKNYHISLTEEELTNLRDTCPNDLMNLIIKNEWMKLLYTNDLEQNARLLIVRFFFNKRKPAPSSLVVSDKKGQIKLL
Ga0214923_100272993F014839GAGMMANENIIISDKLIKLEFENKEMFSRYHKLRRAFNELLDEHQELRERHYQSNNQYDWVDRAGLLDDVE
Ga0214923_100272994F082389N/AMSIVKRKNVSGGTYYFNTTTKKFASEAAYKRSKSSPIAKFKARKGKPSEGTCSVYGRELKVKHTSAAGRGLRKCR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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