NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10047120

Scaffold Ga0214923_10047120


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10047120 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3334
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F011215Metagenome / Metatranscriptome293Y
F029089Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1004712010F029089N/ASDKLGLVPSYDELTTATLKADFLALVKKLPAEQQAKYMKDIDQMTPARFEKGIQFIQNQLAKP
Ga0214923_100471207F001981N/AMIHPTLITIPKADICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEITLKEGSLTPNYEEDEVYADLKAQLKAREELLKMAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFK
Ga0214923_100471208F011215N/AMNLLEKMNADEFKKLLEYKEKYPALGLDLVRALTEKTLPIQLTLGECIDLSNAVGIRYIDFALVIFDTFKSKP
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