NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10219789

Scaffold Ga0214923_10219789


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10219789 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1100
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087106Metagenome / Metatranscriptome110Y
F089954Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_102197891F089954N/AESFCKDYCQYYDASGEMGCTGLKKERIVLSEVVIEDEEVDKHALHYLQLDTQIKELEKEKDSLKASLEGSTGITMSGVEISWTTVKGRETVNAKEVEKLLGFVPKLVGNESVRINIKHSGGK
Ga0214923_102197892F087106GGAGGMAANENTKFQINYKLADGTLINLYASDVKELETGLTDLAMVATMIKSTAVELSGGATAAAVQNIQAQFAATPVAASSDPSVKMCRHGQMNFRSGVGEKGPWQGFMCAGPKELPKSEKCDTIWIR
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