NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255768_10639994

Scaffold Ga0255768_10639994


Overview

Basic Information
Taxon OID3300023180 Open in IMG/M
Scaffold IDGa0255768_10639994 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)507
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009502Metagenome317Y
F101202Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0255768_106399941F101202N/ALSITLRRLMFGVGIKDGRTVKKEPGIRNHGSRATRNGGKKMPRKKRTEKDIRHDEYVNNKKFWVQIDFDDCVSIHEELQAKQMFLGDRNKLVPAEKRLLEFTEDVMFGNYKEVTWQ
Ga0255768_106399942F009502AGGAGGMAVEVKKEEYEDIYDCIVSDQVPPRETAEYLEDKGFYKYYIKRRALGSLWKRKDD

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