NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000053

Scaffold Ga0214919_10000053


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000053 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)170255
Total Scaffold Genes233 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (12.88%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013299Metagenome / Metatranscriptome272Y
F021986Metagenome / Metatranscriptome216Y
F077312Metagenome / Metatranscriptome117Y
F088887Metagenome109Y
F090385Metagenome / Metatranscriptome108Y
F093838Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_10000053171F093838N/AMVMVKTRKIMRRKIPVFRVHVGPGADYDQLKEIPEVQQAVRNEAVYAIKDGIEKHKSTITLFEIANSDYYIELSKDKWKSTLENIIQYYAEKEEYNKCAEARDLISKL
Ga0214919_10000053180F021986AGGAMFYVLIAIGSIITKNKIFMVMACHCLYLKDQREFFELMKKRDSDLVLKMVKCVLSATKRNKTKIDIFDISFKDMSSMLFTIEKSQYNDMLSNCMDDLIKIEEYELCAEIKKLIDKKTRKKKEVL
Ga0214919_10000053188F013299N/AMKNVKQKDDKREWFIVMNSRLEYFAGMMYGGELVWCSDYKEAKLLDDEAKFRTLRSLSYGEELILDYVE
Ga0214919_10000053212F090385N/AMSAQTEMKVISVLLDEAMNEGLEVEVIYSALKVMREEETMTPSQAFQEAMNEWVK
Ga0214919_1000005342F077312N/AMIKLTDLLEKKGVEPLQFPDGFKPAKTVPEGGAMCANCAKWNKETQLCEGQYYIDWNGNGKIPTEPTKYVCIWWVPKNK
Ga0214919_1000005392F088887GGAMPLWLRRTTFNMMKEHYDKEAEEAEKQQNMLKNNSKSEIARPNITPTPNYTTKAPKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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