NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000062

Scaffold Ga0214919_10000062


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000062 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)163824
Total Scaffold Genes262 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)186 (70.99%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003826Metagenome / Metatranscriptome466Y
F005563Metagenome / Metatranscriptome396Y
F010540Metagenome / Metatranscriptome302Y
F011584Metagenome / Metatranscriptome289Y
F033799Metagenome176Y
F036234Metagenome170Y
F045555Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_10000062213F011584AGAAGMIDIAITFFALFFTDVFYTFYLKSINNNETLKASGWSVVVFFIAAIAVVNYTSNHMLLIPACLGAFCGTWVGMKLRNRTK
Ga0214919_10000062233F045555GAGGMNEQIKQPKGKKMTSIFIVRAEDRGAPESIIYGVYPTVELANARCAVLEDSRHDFCHDFVWYDEVKVGPEGADCEFYNR
Ga0214919_10000062237F010540GGAGGMKIRAIVNGVSFYTTKTAIKNRRVGDFTLMNDALYYVLHLKGKNSGFGTRVRYYDHQMKQHCFDVQLNEV
Ga0214919_10000062245F005563GGAMIDYFEALKEMHQGNVVKYVGTVNGNVMSDNGASFCMCRGCIFLFDAGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPEKNRDRKEIKSKLGYSRIGRNNV
Ga0214919_10000062252F036234AGGAMSNRFDLEQQILECWKITDEIPMMESQGANVADMTSLACVYDFKFKQLWATFESMLADKQML
Ga0214919_10000062255F033799GGAGMSRYFIVVCTECSEEHDTEKVKFLNIEEDIQGRDIMYFECPVTNSEAKSLVYAK
Ga0214919_1000006263F003826N/AMDPITIGLAFTAAQSAVGYIKQAIALGKDVHSLTGQFNKFFESSDAIHRERAKIKAKGSRLGKTDAELGHEALQIAMHSDALRTYERELKDMILWQLGKPEMWEHMIKERTRLFKERAEAEQAEAERLLAHKKKMADMFIFAMYFIAGSVILFAIAMGGVAVYGAAEEKRIYEEKVAARAAVIRRQAKEREAAEKKEIDNYTKN
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