NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000086

Scaffold Ga0214919_10000086


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000086 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)143665
Total Scaffold Genes231 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)148 (64.07%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002869Metagenome / Metatranscriptome524Y
F016150Metagenome / Metatranscriptome249Y
F019830Metagenome227Y
F052595Metagenome142Y
F058149Metagenome / Metatranscriptome135N
F068839Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_10000086157F052595AGGAMTTQIPVQGIMLDADYGQSKSYTIACDCHDGDHQVHMWIELDSEQDINLVNMTFYVNTTTPFWKQGFSRFKAAWDILVHGYREDQHTLLLSKQAALNVANTITQVVKELETHDNSKNE
Ga0214919_10000086166F016150AGGMTEEKKSKNPFIAMAQEAKKKNTVSPGLGKATKQQGPKVNTKGFGKSSVMRRTGRGG
Ga0214919_10000086170F058149AGGAMFTPDFYIDLLQSSKRMATNQIYKDERLNKVANNFIDAQTVFAKMMVKNTIEMLSYAADSMSKTIYPHSEDETVKVKTEKK
Ga0214919_10000086228F068839AGGAMKLTSFIFVIAVFASTCASAWTPSAAEVALSAREDARDLILFKLLTR
Ga0214919_1000008641F019830AGGAGMNKRIGPIILDGETADRITLLNLKDYRNYLTKELAEWRKNPHTSDNPDGVWMQPEDVTGNGATIASLNLIIKHFGG
Ga0214919_1000008645F002869GGAGMNNEITTEMLDRTMAWCEQNAFWGNPRAIQRMQDFYIEKTRASVNEDWPGTDGMEAAPLGHLRYRIYYSKDLLTSRVFIFRPHCTWDEQKIMLDMGFVVAQDGDSNNIPDQPVEEGVEE
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