Scaffold Ga0214919

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10000108 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023184 Open in IMG/M

Scaffold ID

Ga0214919_10000108 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	131507
Total Scaffold Genes	143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (32.87%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

131507

Total Scaffold Genes

143 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (32.87%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F009382	Metagenome / Metatranscriptome	318	Y
F009453	Metagenome / Metatranscriptome	317	Y
F010014	Metagenome	309	Y
F014361	Metagenome / Metatranscriptome	263	Y
F015306	Metagenome	255	Y
F022821	Metagenome / Metatranscriptome	212	Y
F037077	Metagenome	168	Y
F062384	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000108115	F007255	N/A	MMPTWFPWIFVGGIVFILLSFIGTKYRDKDYKKIQFLQDFISGSIFIAFAGFLVPDLFPKMELPAEMPVMFHGDSLPDLDLQVGPPRLFGR
Ga0214919_10000108116	F037077	N/A	MPTTIYDSSLLTSRAKNKAESGSFINRITRASNPNTGYAAPLGIYDQSIINTVKKGQMQYFRKGLGGTTIVDNGCPCADVTGACATN
Ga0214919_1000010818	F010014	AGTAGG	MAQPVFPDRGTTSMMNAFPHPQFITRTRREVDPIDAINARQFEHWQTNGKSGVYNRPDVNKQAPFYDMAPNTTRMSDRNYRTQPRYDVDGKKGVENSYFDKYDTTSDARNMARELKASVYEDKNTGFVQESERLLQRNFDSRWLDPTVMKQQAAAAEELRPKMDDIRQFYVNRGTSAPKGAASP
Ga0214919_1000010824	F062384	AGG	MSLPVALTAASASAVLSPVDAVLQIFNSNPYFIGIMMLILNLGGRFINLEVTKNQELFLQRPWVRRILIFVVLFVATRSLHVAFWTTVVVVLLLGYLFNENSAMCLFQGGAKGATCANTPSGNAGHVEEGMTSEEKEILQRLMAKSQRFNKPKKDDMPTESDDDVLHTEIYAANLSLLRSPF
Ga0214919_1000010831	F009382	N/A	MAALALDSTSGFARSATWQSSIALDQPGFTRDTRPNLFATSNGYHSGEAYRSAHNAYVQPVKEAYPARDARYPARAAAIEDGRLVTDYRPQCSKNIKTGQQFNTKVWLINHAENIMDESRKRQVEWTGASLPMANTVPPPAAVVHSTPFYSEVNPTHLKHGLGVERANAAAPELFGTFAYAPTISEMQMNRKNIGITTHSEGGRNSVRGKI
Ga0214919_1000010859	F015306	N/A	MSKSITSTAPRFEKQHVPRFHRLDTAHISAIESLYKSYPFLKDRMEIHMPFSRAKPTFSTGTLWLWPKFDRRPVGYLVFLEGFAPCIWYPERQEGMTFRWQLPPNFSLHGPTVCLANILAGESLLQIEDIVIHQGKDQWSTKTFSERWLSLGEFWQSIPSDQPLLAFKPQIVKPLALSDWSSHYDPSIYWIIQPDHQRQPRWYWKDTVTERVHVNYIAPVLKRSADMAVLLCANCMPYTKMNLPDTYSLFSQEGENLGMASIASMNLSMDLREKMKSQMGLGLPVEVRWNDAFRKYQIVRIMPVESPITTASFFYHLHL
Ga0214919_100001086	F022821	AGAAG	MTEQFVVESEIIIRAVDKPFHERQTLGVFATADVAYQFIEKYVADSKDLHTYFSRSIICSKDDYLECIETGRLVGINIVLGQFEDMIYVRKTLIQ
Ga0214919_1000010871	F009453	N/A	MATAGTLLSDLDSKAPVFSKDDDLVNKILADMNIPSQSNPIMQPAMQQQQHHQQPPPSGNGQRMINAPNPNSTYPMSSDPATATAHMIGKDYPTAADFAGLMPQYSHGGSHGGSSYEHVSPYMQPQQPTLIETFKGNMYSDIVSQIKQPLLVAMIIFFVSLPIINVLIGHYLPSLLRMGGDLTTAGLAVKSVFGGFLFWFIQKILVPLMMI
Ga0214919_1000010890	F014361	N/A	MSLLSAFNTQLVNLFEELCVTFPEEKDIKMATEGIKGARKINPRLILDLFRDHVYKDCSEAIYARDIVHFRNIAQKKIASQFNEMISALVIFDKHWETMGSKNQETIWQYLTVLCHIAEKAHTQY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214919_10000108

Overview

Ecosystem & Geography

Associated Families

Sequences