NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000226

Scaffold Ga0214919_10000226


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000226 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96381
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (32.63%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016250Metagenome / Metatranscriptome248Y
F017603Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000022638F016250N/AMSPFERLLLILGILIIIALVYGTLYSKDLLKKNPFLDKHLLERGMDKPVIWLYYDNSDVNSRSWADFGARGSRALHIPFLNMCYKRIVKHNHDLYRIEVIGGLAGAAERLGGWEQLPPGLRDPIRPVNDEEMNYLRAAILAKYGGLWLSPYSICLKPFGKLPKEKSVFFGMDLDESYSGPNGTTLPGFRAIWSPKPHHPMFEEWMAVAYKRVAEKRGGGQIRKDEKWDFVRFSEAYVETGIVVDPHAELSRKQDGKRIQLEDLLASGAPPFDVPPHSVYVPFPWTELRDREAFGWFLRMSEEQIMESDLAVKFIYKHIV
Ga0214919_1000022686F017603N/AMSTAHTQAPTPNPFLGSYPFEAVEGDLYPPVCLKTHWDPTEMLRHILPQQKVGLPMDFRPLVKVCKNYVTSGPMVPSPMPPKNMVFPTGGEFYPPGRYAAHIDQESVLRTLDQPLDKWCTTQYIPKQTSNMYVSGSTVPDRKGISDAFVDELAMPQALLRTDNVTCRSENDSKYFERSGRLFNNPTKQDRYGADKYYSLPEGHQQGYPMPHGGVNYVQPTEQAIRSKGPIQQPGGAFNKEHASSGSRPIQTAPIQRTSVVGVATCGSAAPVW
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