NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000941

Scaffold Ga0214919_10000941


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000941 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49223
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022410Metagenome / Metatranscriptome214Y
F038097Metagenome166Y
F078376Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000094137F022410AGGMMKFTVEWHDKMHRWDVVRWTETVEGVYAGTTVDRRFVLEEAQEICDYHTDMMNPALWADVESKFDREMA
Ga0214919_1000094158F078376AGGAGMSKKKAKIELYAEAPYIQGFNSARAGEEFANPYADVENAEADADDYARGYENAAEELVQ
Ga0214919_1000094161F038097AGGAMIIITNITGDIRLPWEPGLLEWLQEQYPASQYRVVELT

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