NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10001454

Scaffold Ga0214919_10001454


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10001454 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38796
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (77.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014841Metagenome / Metatranscriptome259Y
F027488Metagenome194N
F057363Metagenome / Metatranscriptome136Y
F103142Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000145419F057363AGGAGMNKKQKAMLASYGRSFLAAMTTTFMLTGGDIFALDATLLKQILAAGIAAVLPVALRAANPNDPAFGKVADAVTEVVVKKVTAPAKKKAVKKAAK
Ga0214919_1000145425F027488GAGMIKVWSDSPYDGTRLLIHLALADISHDDGRFFASQSNLSKKSRCSVEYIRKVINEMITDGHLRIVSKGNSRGNATTYQLIWKKSSLPNDVEENKVMDDDIELPNSDMDNSPTLIPPLPNSTPYQQSYTTVLSTTKSEDKTAVAVRPISDEIAKVWWEKQRVKPLGKGAWHSLLQITKAAVARGHTPEQIIQALDYIGTVPTMRQMDLILKGAGVRKTKTETNAEKAMELAERLKGESF
Ga0214919_1000145450F103142GGAGGMSLDYKGFEWGNRITSDEDSVDRFLHEGLVPESPSVGDLHGAAEWLATYAAETSEDAQGWANVVAFLILTAESKEKRSAIAKAKREFAKEKGIPVSQVRINRNN
Ga0214919_1000145458F014841N/AMSEEQKKPSIIDNALAEIGRIAFIEPAICTGWVLVAEWMGGNDDHWTITLADDDNPEWRSLGLLHHGIKTWEDADDVGFKNSSDESKD
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