NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10001462

Scaffold Ga0214919_10001462


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10001462 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38683
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (86.36%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001848Metagenome / Metatranscriptome626Y
F004547Metagenome433Y
F004950Metagenome417Y
F012116Metagenome283Y
F060718Metagenome / Metatranscriptome132N
F083892Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000146212F001848GGAMILNYIPKDQLRSHWNYVKHGLEIVRSKGHPRWIVEDVYCDCYENRSMLFIAIHNKQPYGFVVLQPIGQTMHVWAAWSTINDEVLFQQAWQEIQQIAKQGGKTEVTFTSGRKGWERKVKQMNFKPTTWTFTL
Ga0214919_1000146218F004547AGGAMKQLLMAITLLLLWVFLYNYAEAKELVKEMSMATEAGEIVLTSEECIFKKQGLQGYDYAAYATEKGHPNHEGCWKSDSYEGKHAVYIFFPEINQTAVFDAKLFQPKANI
Ga0214919_1000146222F060718N/AMIVLNILNFIGLTILKFLIVALLFGAMGLSIIFMYVMQYLTQALHYVDKNVN
Ga0214919_1000146228F012116AGGAMQPLAYLVEEFDADNKLVWSGLMASEPREMFWFKDLKSKMHNVTITPLIPDTANIIKVTNVKKYDSSRFVTGL
Ga0214919_1000146241F004950AGGLGKGSTRRPLLISETEIENNWNKIFKRKENSPDVSPHAYEYELNKSTGEVEKRFIEGTSKPNESQFDGD
Ga0214919_1000146249F083892AGGMINQNFDTGYNAGLNALEELSLINENPDHTMLAGLLSSIMNCIYYYAPSEKAVNDLVKFATDFAIEENAKIGMILPKGH
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