NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10002614

Scaffold Ga0214919_10002614


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10002614 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28069
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (77.55%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002149Metagenome / Metatranscriptome589Y
F003304Metagenome494N
F007467Metagenome / Metatranscriptome350Y
F022371Metagenome / Metatranscriptome214Y
F047565Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000261425F022371AGGAGMLCLLELKDILWVISWFILYSWLILSIIYCAGFIILKLIDYIRKELDL
Ga0214919_1000261427F003304AGGMKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR
Ga0214919_1000261434F007467GGCGGMNDKEAWDQFEDGLQDAKSYDEAVAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0214919_1000261443F002149AGAAGMTALEYIEESGVPESMWTNLAEWYGWFEKQGMVGVVEDKDGIAGVALARCVKDGQRADHYVHSEDGENVFVDLTISSKGGKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
Ga0214919_1000261445F000635N/AMTLTEIAQYAGEKVGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTSRTITLGSNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAELNLYPRLATSGTIPLRVVEKLKCLTRTNYIVDFPPSSSALNDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0214919_1000261449F047565N/ANRLGALEHLRTKVLAVAGVVGLACSMAWDVLKNRFAN
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