NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10002639

Scaffold Ga0214919_10002639


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10002639 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27881
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (20.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077282Metagenome117N
F086620Metagenome110N
F102551Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000263914F077282N/AMKIIITESQKESLDYYQLSNCIKRRIDLDGVDDIVDEAMEEFVSLRNTTEGFIDMVINYTYDLVDEDYGVEKCWGDETWNQFSTPIKRFLDSRYEAKLKEYFENHYN
Ga0214919_1000263923F102551N/AMRNYSNEIIDKIELIKEIIVSRSILRNIRDDIKWEVDIDSDRINGKIYEITLYLKVIDQDCSDCHFEPDGILEEIHKYQKSIYNSISKITFDQNLNMVKGSGSLRGITVSEVNFALDTITIEYGIFIDIEKEYDW
Ga0214919_100026395F086620N/AMLTRKQEQGLKILESIVQSEYPFVVSLSKSDRYSLSEYATTMGIMLEIDPTTLSKYLGLPFAKKFKETPSIWDYYMRDRDLSYVLHLFEDEHQHVLGWQFNKGMEEFITKAYSQLPTNMRVNIYSDSPEYDIPGWARKTLHSPRSLTIDRFFLAPDSKRPKFED
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