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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10003040 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25804 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (76.74%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000166 | Metagenome / Metatranscriptome | 1810 | Y |
| F001097 | Metagenome / Metatranscriptome | 780 | Y |
| F001713 | Metagenome | 648 | Y |
| F001799 | Metagenome / Metatranscriptome | 632 | Y |
| F002099 | Metagenome / Metatranscriptome | 593 | Y |
| F002487 | Metagenome / Metatranscriptome | 554 | Y |
| F007203 | Metagenome / Metatranscriptome | 356 | Y |
| F059761 | Metagenome | 133 | Y |
| F067527 | Metagenome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_1000304019 | F059761 | AGG | MTELSLFEKAMGWRKRQMVTSQVDRNEIIGKIRSDTLEEVAREFDKMKPFGDTAQSFATFVRDMKSCPPCNNNCNQGKDCPARCK |
| Ga0214919_1000304020 | F001713 | AGGA | MKYEFDTTTGEGSVIVTVVMEYEQDEEGTYNENIDEVWFEGRNVMGIFTDTQFKELEIEGTMRLSSHLLAEADHAKIIAYEHE |
| Ga0214919_1000304023 | F001097 | AGGAG | MNFEWPINESSRIKPLQGLRSERVDTEIQQKEIDDWLKQSVALVAGSVRGLGTNQRKVRYFAFEGQNDEVTK |
| Ga0214919_1000304027 | F002487 | N/A | MTRQDAIKDLSHGDYCCYCTEPKTSGLCCGENHFVPFEDLYDDDKEAMIEEYLSKGN |
| Ga0214919_1000304033 | F000166 | AGG | MSNIPTPEHIELFAQSVRKWQQILSLGDWRIEKGIKPAKAAMASVEFNQTARLATYRLGDFGAEKITPDSLDRTALHELLHIFLYDLMCVATDPKSSDEEIEMQEHRVINLLENLLSKDSNGFT |
| Ga0214919_1000304037 | F067527 | GAG | MIIPSKWYPMVQPRYDFQTVVFDKAAEKVDDDYRLAMKAHKIELVIAELEVELYNKKARVNQLELAMFKTRRLDLYA |
| Ga0214919_1000304038 | F002099 | N/A | LGNAVRWLLALVLTLALHSTGKDLCSVREFWSIAYTIHNPSERHQQLSMWLTNNARLCRSQDFVVIWNNLPVWAGTADSAEIRSKVIHGYKEAIEREKK |
| Ga0214919_100030405 | F001799 | GGA | MDKHLLAQWAKNLLNDDFFKEVLNNLKNQQISVIINTSAEECDRRETAYQHIKTLELITGHLEGLASETVIRDKKWKIL |
| Ga0214919_100030408 | F007203 | GGA | MYVQMQGINLAPKVKELEKRLEMLENMVKELQSSSRPKLGRPPKDAHGNERLEVDTAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |