NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10003264

Scaffold Ga0214919_10003264


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10003264 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24649
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (61.36%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F001991Metagenome / Metatranscriptome607Y
F002085Metagenome / Metatranscriptome595Y
F002997Metagenome / Metatranscriptome514Y
F009328Metagenome / Metatranscriptome319Y
F022651Metagenome / Metatranscriptome213Y
F024506Metagenome / Metatranscriptome205Y
F041736Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100032642F041736AGGAGMILKSQSMRFVMATMMDVEHEWQSSKWKDKSDMINPDVPMIVQVGDYGYEVQSCGGDGDIEGFVIQCKEEPVCKWEDMECIKL
Ga0214919_1000326426F001991AGGGGGMALFSKNTLTQVSGFDNPIIAGELVYNQKTYWNLTMATDGVAVDLTGATITAQILRRQISNLVDTRNGLSFDIADYTVSTPTAVSLTISNRNDAQGLFTLVIDESAWSVISTDPQLNISAQNPVAFSGRIKLAFPVSGTTPANDSIIFLLYLVRSDGVVN
Ga0214919_1000326427F000324N/AMLIHNVTYDGATLHVYHVNKGQGLPRHSHGYSHLTMCHAGSCAVRKEGKELIMTKDTQPVNLLADGWHEIEALEDGTVFVNVFSEGKQ
Ga0214919_100032643F009328N/AVICGRFLPANEYGVIVHDDVPHPADMDFGDEEKPQ
Ga0214919_1000326432F002085N/ALGWLVQRIRGGAVNVITPVVGTNVIRYADFVRITTATAIYRFATTPYAITVSAVDANPFSGLGQLVKVGSAQRDIKSTANETTITLVGIDTANLALVLGADIKGSQVEMWHGFFDSSDQLITTGGTGGLYQFFNGYINTFSISEQYYEEMRGYMGTITVSCSSIQLILQNRNAGRYTNDNSWQYFNAGDTSMNRVNFIQTINYAFGKQI
Ga0214919_1000326433F024506AGGMSIQAILSIAESIGINDHKFAGQMLSRNMRISTSEILTVQPFQFTIKPMNYLQYSTNRAVLSALRQSDRITEQYMNFGTTGWLNYIKYQGDMTGIQVAACQIQTSSTGMTIVLGSLPSITSTLYIVKTGDFIQVGRYSYIATADVQRGGGSTVNIPIHRPLMTTVASLTAAVIGEYGTTASLGGLTYTGITFPVVLRDYPTYTLVPMTNDSFISWDGSFNAYEVVL
Ga0214919_1000326438F022651GAGMTDTILHDTKIQNTADLLSFLQTQSEQRKDWFGFIQQKLTAVSLAHKIAERHADKMSPSEVVDYAKEVTELLYLRVAKPNAWRF
Ga0214919_1000326443F002997N/AMAIARYENITVNSLSFGVSTFGEQTTTSTLWFQTRALVKSVANHVAISEKYRVYSDIVNFTLNYTPNTKEIIDNQNLYSINWKNLDWRIDNVRETDDRMHVIILCVRNDPVVAQ
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