Scaffold Ga0214919

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10004489 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023184 Open in IMG/M

Scaffold ID

Ga0214919_10004489 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20391
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (92.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

20391

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (92.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012214	Metagenome	282	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000448911	F000857	GGAG	MELNLNNEEAKVNEDYYTGGVLAGGLEGALIKNDKMFNEVKSGTWSQTFSTPNMNYKVGAIDGERYVQYEQKNVESVKEYCKERREFYKMIGTTDNPIFAGTFEAMNLPKCFAHEISGKWFNNRPWDLIKQDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK
Ga0214919_1000448915	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPVTQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKVDVDLQGAMQEAMAPDESEMMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKTQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMSRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAGTCLKGQEFLDAKSVENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETQSKVALNNAKTQESGSVTALNMKKAEDIEMDNYFEGLAAKRGKLSAVQID
Ga0214919_1000448917	F006264	N/A	MEDPSNIFQNKLSSQAEVCARKTLEWLQKDLQGTHKLEPDEVYYLAYAAQILLDIRDSYGKK
Ga0214919_1000448918	F001059	AGGA	MATYDIDALKVDLPSAKELAQFVYDKTDGVVSLDLIGKPKEEQYIVAKNALEGKKVPAEYLTGFNPYVEKKDVIPEDPLRKMPKRSIDLPDEESQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKIPVGEKLNKYGQTVPEKYSWIDPRTEERVLRNPDGTFSKDGRGVHTFLVGEKGGGVWNMIDKDIVSISAKNIADPWA
Ga0214919_100044892	F012214	GGA	MSDYSRLRTPFTSMSFTPDVPSNALGPNEYNSGKNIEADVRCIKKIFGEIAIASTITDMPIFMEGGFRSETSWVYIVATRNSSSQGKWWMITATGISNITPGVGANPSVYISGYTEDVNITTSWVGNVFFINDTVQNPMYFLPTSNEITVYSDAAWNYDVGVTSTRAGFVRNFCSPNVGNILISGNLTKVIGGTSYNYPTTVRWSQAFANQGYPATWEPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQNSTAPIFGVRLLNQGRGLFNNNCWTNTDANVYGIDARDIWVFNGSEFSSLGNQKVKDYFFANLNPTYAGRMFMVNNTQKYQIEIYYPDLTSSGWCNKMLSWRYDLQVWNAPKDIQNACMGTEGPRWIDSSPDYFNLASRAVVYARGGVSSSRLIETSIGNSFVGSAIDSQFERNNIALQTANGPVPYSSKVYIHRLLPEIAGTGAINITVGGANSTAQATTYGETGITNIDTDTPWVPTQQNTFRTVAVKFGSYDATDTWKMSALNMQATVTEDAF
Ga0214919_1000448920	F027490	GAG	MSYGTVINGGAQMRKGVTKGINDKLSTRSAEDDRRATVAGAVNSAYKVNTISSQHTNNTKGGAFTKPSNRSKDYAA
Ga0214919_1000448923	F098944	AGG	MFDEIRPEGSTVTSEEIKKRAREYAKARRAQNKAMKLATGQIEPKKAPVVDEFDMSTFVPRSQKQAGRPKSIVNKVTEYGALFNKLNDERTSKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFLDSLRKV
Ga0214919_1000448924	F001915	AGGA	MEWTLAHPLHDVDDIVDMADSVFGHEADGILTRDKAVFRKNVTVATTVQLFDKSKEFIAVCRGPKVIDTFLGQAEVNDALLGYCWFDRGGYTTYANEEISNAKFHHVDLELSPRLRVRLINEMIDQHILWANQWYIPVVCSTSIRAEHDGFMKIHKKRGFQVNGSYAWLRTEKGMECLTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214919_10004489

Overview

Ecosystem & Geography

Associated Families

Sequences