NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10007037

Scaffold Ga0214919_10007037


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10007037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15288
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010080Metagenome308Y
F014136Metagenome265Y
F023340Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000703717F010080N/AMTTNTTIEVTGLREAIRSLNKVEPGLRKEFAAQATAIAQPAILEVQRGYDREYLSGMARAWTQSGNKKFPFSIAKAKSGVKLKLDASREATSLIYIQQINAGAAIWESAGRKNDNPLGTNLGSVPKPSHTRNLGPGVFRRRKEIERQMLKASMDAIRLVQKELD
Ga0214919_1000703723F023340N/AMARLLGLFQSHQPLLEGLMLPAWGYLPLWSKDKLTLVQIFTDPATEEIVKVTVAHRRAPWMTFASITEVEKVD
Ga0214919_1000703725F014136GAGGMELTTDEIIARLMNLSVKLDGEMRFEEGSTISQAIALIMTLRNAAERMRHPSNMPRLFDKTNDELKAVIEWIVENPS
Ga0214919_100070373F014136GAGGMELTTDEIIAKLMNHIHKLDGEMRFDEAAVISQAVALIMSLRNAAERLRHPSNSDIVSAIRSQNQDELKAVIEWITEQK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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