NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10007079

Scaffold Ga0214919_10007079


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10007079 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15246
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029418Metagenome188Y
F100701Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000707932F100701GGAGMKTLNLKQIAYQQASFADNLKGLARSVYEQYPNLDDEVADEVKADLFAGYQLRVAENQPKIDQHFIVESGNYLPVEKLAFDNHKGEKYHRTVANIMAYTPQAFGALRQSNPQLHAVIKSERDSVSKYCSNRLADLKKAIHAIKNEGVARVRGATKTFAETVKDTLDGLKKKCANAKARGDDTANDKKLITAISEFNRKWVS
Ga0214919_100070797F029418N/AMTPEQEAKKRKFEEDLIEVAVAEYYRWVEAHKAVRTEKDARMFYNAMRLGVIRGINFATNQYMQSLKNFEESKVNGNTTDTQK
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