Scaffold Ga0214919

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10007448 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023184 Open in IMG/M

Scaffold ID

Ga0214919_10007448 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14762
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (59.09%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14762

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (59.09%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F005503	Metagenome / Metatranscriptome	398	Y
F010982	Metagenome	296	N
F016643	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000744815	F016643	N/A	MTLWNPVWRVTIDGTIYTNFALANLTITSGRVNIYEQANAGYVNLQLINLEQTTVDIQINDSVTIELQDSTATFTPIFGGTITDCTIAVSATGNIGINQTISIIALGALSRLPKALTDGTLASAHDGTQILHILSDLLLNNWGEVPAALTWATYDPTEDWAHAQNVGLGEIDTPGDYDLAARTADRTDMYSLVSALATSGLGYIYEDAQGRINYADSTHRSQYLATYGFTDLSAAQALSGGISIVTRAGDVRNSITLKYGSNSANETTPFEDSSSINTYGRLAQIITTTLKNHADADAQAAFYLTLRAYPQPMFNQITFELTNPELDDSDRDSLINIFMGLPLQILNLPLNMSAGTYLGFVEGWTFRAGYNSVSVTALLSPVAFSLQAMKWLDVAPIERWNTITPTLDWANALVVA
Ga0214919_100074485	F010982	AGG	MVRLSREDEIIAHGAGLARESRYGSSDKRVKNGGNFHACVTIHAEAVGAEMAVARYFGVSDFVPTVNTFKNEPDVNWDGLAIEVKQTPHKRGHLIVTDDDRDTDIAVLVVGESPTYYIVGWIPVGVAKRPRFQSAQGGYWVSQINLQPIENLRKSIHANT
Ga0214919_100074486	F000403	N/A	MSDFMEIINPRTMTCKLIENGVVVEEYKVEQCDKCSSLVRFDAFGFQKGYGNEKIIWFCQGCR
Ga0214919_100074488	F005503	GGAG	MTTSEVGLFVLMAIGCILWAICSYAVGYKEGHKDGYQRGKAVGRHASSKAVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214919_10007448

Overview

Ecosystem & Geography

Associated Families

Sequences