NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10009240

Scaffold Ga0214919_10009240


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10009240 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12736
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (35.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026210Metagenome / Metatranscriptome198Y
F032572Metagenome / Metatranscriptome179N
F049419Metagenome / Metatranscriptome146Y
F071966Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000924011F049419N/AMKLPKINLLDLATTYIFFGLVYGGIVTLAWNYLFEPITFVHLSFLQGFGIHLICRILFGNTNTNYVSNFYSQKTPDLDKIDSYLKEIQADLDKEADEVEKQYEDLDKKD
Ga0214919_1000924029F026210N/AMSNANPLDYDAKYPQVAESTNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEAIHFVQEIGIKIQ
Ga0214919_1000924031F071966AGAAGMSLLGIYFDIKGYVFKPFYLILGVLYFTLLLSLLGTLYIILYIRNTLEKVLKQIEKKYYQ
Ga0214919_1000924042F032572GAGMNSTYQYIANYINKPTIFCYIVDCVVNNNPYLFTGEYNKKLLNKKVWMAKQVFPHCEPTQYTYFKTFKEAKDALNRWGAKWERV
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