NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10009946

Scaffold Ga0214919_10009946


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10009946 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12154
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F003807Metagenome467Y
F011761Metagenome / Metatranscriptome287Y
F040626Metagenome161Y
F058142Metagenome / Metatranscriptome135Y
F058146Metagenome135Y
F101171Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000994613F101171AGGAGMEIIPAVDDKNSINSAEFVKLTIYNDVSNTADTTIYTFSSAYKYETINGTQYSPMGGLLAVGIQQRDIRVTSADTSISLSGIPSDGSDNMAIVLGTKIRGSKIEVIRGFYNDNYVLTSVAQRFTGIVTSYNITEERHDLIDNFTITLNASSYKNVLQNRVAGRKTNGESWRSFPVSASDTSMDNVYSLADQYFDFGAKPKQGATTQSTASATTAQDTRSGGRDSI
Ga0214919_100099463F011761AGGAMAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTEAFLDFKATVNNTYYATSADGFDRVLQLGAMEVVAAGTSPAGSTAGFTANSILELIRNVKQNFKVARMPGTPVIVLDSNGNANYTGETPAGQTGSSLTRLLAELTGGAVSQSGGSNLSALGNELLTSGKIESVYGCMVMFTTFLQSATRSVAGVASQPVLVGAYFGDSALFTVMKEGLQIKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQA
Ga0214919_100099464F002260AGGAMSVPYQRISNATVRDIQFYDPAAERRASALNVDWEPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLVRLDTFGAIQVFYESLVTDVSNMNEVDMQNYEFAVKRCENEWTKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNGDRRYF
Ga0214919_100099465F058142GGAGMAQAISYTVLNQPYTTQDQIIAVLRRDILNTWNIPVFEDFPSASEKVRYGVYVSDVHQDDRNPHQLGVQYGGSIYHAYDTFSVTYISYQEDPYNQPVNAIIANLVTALKDDGEQLFDGYFERDFTQVRTYGPTQAERHDWTFRVLRLEFNT
Ga0214919_100099467F003807N/AMEQPYLNTDEEKLRSLLSDEAKMMPMLDNMQATIRQMKAKQAFRIALLNQLIDNLNEKE
Ga0214919_100099468F058146AGGAMKLSQLTAKPQLILIELNDEEIIKEFGEAITFHTWDRQPMDVFMKLAGASNKDTSEIIGIVRTLILDEKGKEILKDDAMLPTNVLMKAIGKVTEVLGK
Ga0214919_100099469F040626N/AMALILTVDGLGKRYGMLPSEVLERSNTFDLYIMDAAMTFENYHHKKSMNNGREPMPDYTTDELQNILNKAKGE
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