NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10010468

Scaffold Ga0214919_10010468


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10010468 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11742
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002099Metagenome / Metatranscriptome593Y
F005320Metagenome / Metatranscriptome405Y
F042293Metagenome / Metatranscriptome158N
F058807Metagenome134Y
F088893Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1001046812F058807GAGGMQVDLIKEHEDGSATFQFDLTNEEAKALLTFGILEAIKAGLREGERLTVEGDDIEDISNTGLSD
Ga0214919_1001046817F005320AGGAMSIDTVKPVKVAGEIFWSNWMNTFNTKFNEDNKKYECTIGNLSDAACEKLKELGINIKNKESMGNFIVAKSTYLFTPVDEEGNPVDIAKMGNGTKCHAVISSYRHKMSAKFGAAPSIKKLIITELKVYVPEGAEEAETADDVL
Ga0214919_1001046818F088893N/AVKHIDKNQILFSVEGETFKIKIGEDLDLEEVYTVLLSALVHLEDLASGNTAHPSQELH
Ga0214919_100104682F002099GAGMRKLIVVLLSLGLLASTPSSSSDNCSVREFYGIAYTVHNPTERHQQMSMWLTKHQTLCKSSDMTVIWNNLSEWAGSADSAELRHKVVIAYKNAVAREANK
Ga0214919_100104689F042293GAGVLNITFEELKEALKRLDEVTLLELLGLQSDDLVERFDDVIEKKQEYLIKELD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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