NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214919_10024646

Scaffold Ga0214919_10024646


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10024646 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6523
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005293Metagenome / Metatranscriptome405Y
F006181Metagenome / Metatranscriptome379Y
F067662Metagenome / Metatranscriptome125N
F085603Metagenome / Metatranscriptome111N
F097200Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100246461F005293N/AMTSDYVPFVPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGQRLSAEVVTYRKQEVVRNRIARGLRRAQQRAWVEKKRGYFTPEPITLGNVVNF
Ga0214919_1002464611F097200N/AMTSQLASLKKLQGHSREQLFKALYESSHSDCVVEVIKSRRKPDVCIKRNGVVLHNISVKSADKVIQWELKSESKLLSMYGNNHLLVEFMNIRTKHDKPTQKQLFVDYFPRITAYLTDKQNFKQFITKHFTNNNEVDLLAVGNGISYNIYNFQQVLDYMADNYVVKNSEQQVQINTTDGYLMFSIEIRSDKKCMLIRQDVSSLQRVLKHITPVDIVPSV
Ga0214919_1002464617F067662N/AMIPPSKTETIKTIADLKAYFVEVDELNRYNGVTAVRTTKDVATELLLDNVSIIRGGKIRFFQIKHIGLGVYDVKLREIDHINTSLVENWEKRVINNTQHF
Ga0214919_100246465F085603N/AMKVQIEFNTDNAAFEDSFLMEVTRTLQQCKTALLDSERGTITIRRPIKDSNGNRIGVVSIGNN
Ga0214919_100246467F006181N/AMKNLIHVIYPDDFTSSFIMDNDMSTADILERVFAEWNHGSGMECEMFVNSKKRSLCVNDIVCVNGEYFQCASFGWNSVTPEYVNELESDVAKHPSRCEGAWFALMDVMWERQNFVVV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.