NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10035647

Scaffold Ga0214919_10035647


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10035647 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5061
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F003539Metagenome / Metatranscriptome480Y
F006739Metagenome / Metatranscriptome365Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100356471F006739N/AYCFDIETDRFNTVVGYEGRAYARIQLLEEIEKTGDVLTWQDLTTGESRQAVIEQVTFTRMTPPDKRFDGFGGIIEITVRTV
Ga0214919_1003564710F003539GAGGMSYIENYNYLVQQLAAEYARRYTMVERDDIAQEMWVWFVGHPNKYNEWSALEQKDCDKVIAKSLRNASLKFCEREKAKHSGYQSSDLYYYDASVIEAFLPSIISDSYEMPSKIQDLNSKSGSSVLSEGNNWLTLRSDIAKAYYKLSEAKQNILRLRFSTEQPDWTELSKDMDSTPDGARMKVQRAVNSIIKALGGWKSYRDDDATSS
Ga0214919_100356475F000368AGGAGGMEQFKQLALSWFRAAAAAVLVVYMTGETSPKTLAAAGLAGVAGPLLKWLDPSAADFGRGS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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