NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10038808

Scaffold Ga0214919_10038808


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10038808 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4778
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005451Metagenome400Y
F014136Metagenome265Y
F043924Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100388082F043924AGGMRTPVRVILTPAEMRIACIGGVERNLDATEKNQRPNQPDRKYHEQNFFQTHIFGAIGEYAVAKLLGAKWQWEKETNGFDVLQYQVRSTENPDTTIKVRTRDNPDHNFIFCKVRENRVLIEGWITGREVIANNEEIFTDCFTIKDYRLYPLTDLPEFPQTLPKGCEMYKAPVKRYG
Ga0214919_100388086F014136GAGGMELTTDEIIARLMNLSVKLDGEMRFEESSVISQAIALIMTMRNAAERMRHPSMSYNEELKAVIEWITENPS
Ga0214919_100388088F005451N/AKLVELCGKRWGTKSLGTYANRPMRNNAGLSVHATGYAADIQYKDEAQAREMWDWFLANSKALGLCELHWYAYGEYGAGYRCSRGEGKTGVKIYTADDNAGSYEGNPNWLHFEMAKQSAEAFEAAWRALPKP
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Institute for Fundamental Biomedical Research
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