NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10047893

Scaffold Ga0214919_10047893


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10047893 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4128
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015467Metagenome254Y
F023588Metagenome209N
F035297Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100478932F023588GAGMVLVTWADAHSGVSTWTPIDSLDKDEMIVSTCGFLLATVDGGKPDHITVYQSRTMEDDIDHVLHIPCAMVRKIAICTPDQLG
Ga0214919_100478933F015467N/AMRNGTQNSNLHPRSTRVGLGSFAPDWSLNSPHTFLLGCGLYTHQPAKIGQDMRRITATIVTTVLLTIGIGTAQAAQAPKPTHNPSVTRSEAIPKERQPNIVFRHGDISWLPQLAAEAGWPPHTWKRLGQIILRESGGCPNRRGGDIVNKNCEVIGHDGSNHRSDAGALQINGINYDPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFRVTGSDWSPWIVPEGGW
Ga0214919_100478934F035297AGGAGGMEPLTDRIKAGWIIAFTMIGWLFFLLPMTGEDIPEGHPTPVSQQAWVTWIIINFVMLILVHLLISREHRANKRAIKTLKRVAKARLNHPTHR
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