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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10048303 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4104 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001731 | Metagenome | 644 | Y |
| F012452 | Metagenome | 280 | Y |
| F095153 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_100483031 | F012452 | AGGCGG | MGFLDNYEGNKERTDRWIATFPLGRLEAHIVNFDAEKGSILVQAKAWRDQNEIEPAGIDYAFGYLAAYNANMKRWFVEDTVTSALMRVMALVMGGTEKATRETMQQVETMTTKVATADPKQEYDYWTTKHGDVPSFKSEDELTAAEKAQTIGGAIQEVTSQLGGEMLAEAPQCQHGHRVWREGVSAKTGKAWGNYSCVERKPN |
| Ga0214919_100483033 | F095153 | AGGA | MTEAITAIGLIAATTVSSIAAIYAAKSEKNSRPVSNGFADGLRADVREIRSLMIDHLKDH |
| Ga0214919_100483038 | F001731 | GGA | MTQFNPIWKVTIGGVEYTSAVLSNLTIQSGRVNIYEQANAGYINLEIINLEQTNVPIQINDSLAIQLQDSAAAFVPIFGGSVVDVAISIAEIGSVGYTQRIKIIALGALARLPKALTNGVLPKEGDGDQIYAILKSVLFDSWQEVPQALTWAMYSPTTTWANAQNSGLGDIDRPGNYELAGRSSSRTDVYTLVSALATSGLGYIYESATGQIGYADSTHRSQYLAANGYVDLSANDALGSGLMIQQRAGDVRNSITLKYDATSSSEKSAVNTTSVGLYGELAQIITTTLHNAADAQSQANFYLSLRAYPQYNFNSITYELTNPEISDSDRDNLINVFMGMPISISDLPLNMSSGTYLGFVEGWTFRAQYNQISITLNLSPISFSLQAMRWNDVPVTEKWNTINPTLDWQNATIVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |